Questions and Answers : Unix/Linux : Boinc/Rosetta crashing in debian stretch
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sinusoidal Send message Joined: 17 Mar 20 Posts: 1 Credit: 972,628 RAC: 0 |
Anyone else seen this before? After several hours of working fine, suddenly all of my rosetta instances go <defunct> and no new work occurs (on debian stretch). Same thing is happening on two different machines with the same debian installs. $ ps aux | grep boinc root 6825 0.0 0.0 52968 3280 pts/25 S Mar21 0:00 su boinc boinc 6826 0.0 0.0 21168 4960 pts/25 S+ Mar21 0:00 bash boinc 6830 0.0 0.1 433732 16628 pts/25 Sl Mar21 0:08 /usr/bin/boinc boinc 7243 33.8 0.0 0 0 pts/25 ZN Mar21 478:00 [rosetta_4.08_x8] <defunct> boinc 7246 33.2 0.0 0 0 pts/25 ZN Mar21 469:25 [rosetta_4.08_x8] <defunct> boinc 7248 30.0 0.0 0 0 pts/25 ZN Mar21 424:39 [rosetta_4.08_x8] <defunct> root 14266 0.0 0.0 12780 1012 pts/23 S+ 16:20 0:00 grep boinc Nothing untoward in the logs, it's as if everything just stops. I even ran it interactively and nothing comes up; 21-Mar-2020 16:47:08 [---] OS: Linux: 4.9.0-11-amd64 21-Mar-2020 16:47:08 [---] Memory: 15.58 GB physical, 7.45 GB virtual 21-Mar-2020 16:47:08 [---] Disk: 19.87 GB total, 16.29 GB free 21-Mar-2020 16:47:08 [---] Local time is UTC +0 hours 21-Mar-2020 16:47:08 [---] VirtualBox version: 5.2.38r136252 21-Mar-2020 16:47:08 [---] Config: GUI RPCs allowed from: 21-Mar-2020 16:47:08 [---] 10.10.22.10 21-Mar-2020 16:47:08 [Rosetta@home] URL https://boinc.bakerlab.org/rosetta/; Computer ID 3825818; resource share 100 21-Mar-2020 16:47:08 [---] No general preferences found - using defaults 21-Mar-2020 16:47:08 [---] Reading preferences override file 21-Mar-2020 16:47:08 [---] Preferences: 21-Mar-2020 16:47:08 [---] max memory usage when active: 7977.12MB 21-Mar-2020 16:47:08 [---] max memory usage when idle: 14358.81MB 21-Mar-2020 16:47:08 [---] max disk usage: 17.88GB 21-Mar-2020 16:47:08 [---] don't use GPU while active 21-Mar-2020 16:47:08 [---] (to change preferences, visit a project web site or select Preferences in the Manager) 21-Mar-2020 16:47:08 [---] gui_rpc_auth.cfg is empty - no GUI RPC password protection 21-Mar-2020 16:47:08 Initialization completed 21-Mar-2020 16:47:08 [Rosetta@home] Started upload of 10v3nmgb_c1965_10mer_gb_000547_SAVE_ALL_OUT_897218_301_0_r761872484_0 21-Mar-2020 16:47:08 [Rosetta@home] Started upload of 5zz2mv6l_3h3_design2_COVID-19_SAVE_ALL_OUT_902695_1_0_r558456727_0 21-Mar-2020 16:47:16 [Rosetta@home] Fetching scheduler list Anything I can look at to determine what is going wrong if nothing showing up in the logs? |
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Unix/Linux :
Boinc/Rosetta crashing in debian stretch
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